Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn11aQ9R053 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn11aQ9R053 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn11aQ9R053 Gm14730-201ENSMUST00000122378 1045 ntBASIC16.84■□□□□ 0.29
Scn11aQ9R053 Gm27772-201ENSMUST00000184900 187 ntBASIC16.84■□□□□ 0.29
Scn11aQ9R053 Gm7498-201ENSMUST00000203282 1084 ntBASIC16.84■□□□□ 0.29
Scn11aQ9R053 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn11aQ9R053 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn11aQ9R053 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn11aQ9R053 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Scn11aQ9R053 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn11aQ9R053 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Scn11aQ9R053 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.83■□□□□ 0.28
Scn11aQ9R053 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 AC131690.1-201ENSMUST00000218406 374 ntBASIC16.83■□□□□ 0.28
Scn11aQ9R053 Gm8598-201ENSMUST00000221184 836 ntBASIC16.83■□□□□ 0.28
Scn11aQ9R053 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Gm9347-201ENSMUST00000211473 1607 ntBASIC16.83■□□□□ 0.28
Scn11aQ9R053 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Gm37411-201ENSMUST00000194180 2282 ntBASIC16.83■□□□□ 0.28
Scn11aQ9R053 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Gm13859-201ENSMUST00000119936 1423 ntBASIC16.83■□□□□ 0.28
Scn11aQ9R053 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn11aQ9R053 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm6983-201ENSMUST00000214912 628 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 AC192088.1-201ENSMUST00000227561 301 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm8775-201ENSMUST00000170943 1327 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm28911-201ENSMUST00000188837 117 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm43094-201ENSMUST00000196549 921 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm3786-201ENSMUST00000202659 378 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 Gm7446-201ENSMUST00000221035 1240 ntBASIC16.82■□□□□ 0.28
Scn11aQ9R053 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.81■□□□□ 0.28
Scn11aQ9R053 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Gm38102-201ENSMUST00000192791 1935 ntBASIC16.81■□□□□ 0.28
Scn11aQ9R053 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Gm7172-201ENSMUST00000218047 1152 ntBASIC16.81■□□□□ 0.28
Scn11aQ9R053 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn11aQ9R053 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms