Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm17870-201ENSMUST00000219489 1174 ntBASIC19.25■□□□□ 0.67
Scn4aQ9ER60 AC134254.1-201ENSMUST00000221362 167 ntBASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm9279-201ENSMUST00000223175 1606 ntBASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm14350-201ENSMUST00000116642 640 ntBASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Gm43081-201ENSMUST00000199082 1380 ntBASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn4aQ9ER60 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm25214-201ENSMUST00000104573 129 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm11597-201ENSMUST00000121423 964 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm24548-201ENSMUST00000158650 108 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm8194-201ENSMUST00000159783 859 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm5846-201ENSMUST00000193146 1414 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm44967-201ENSMUST00000207047 631 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm9755-201ENSMUST00000032981 1356 ntBASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn4aQ9ER60 Gm18244-201ENSMUST00000219747 1566 ntBASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Gm23270-201ENSMUST00000104055 131 ntBASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 AC139054.1-201ENSMUST00000226898 1598 ntBASIC19.23■□□□□ 0.67
Scn4aQ9ER60 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Gm11667-201ENSMUST00000119828 486 ntBASIC19.23■□□□□ 0.67
Scn4aQ9ER60 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC19.23■□□□□ 0.67
Scn4aQ9ER60 CT573086.1-201ENSMUST00000227202 1074 ntBASIC19.23■□□□□ 0.67
Scn4aQ9ER60 CT025533.2-201ENSMUST00000228715 1248 ntBASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn4aQ9ER60 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Gm9550-201ENSMUST00000161130 862 ntBASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Scn4aQ9ER60 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms