Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm8410-201ENSMUST00000117225 605 ntBASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 AA543401-201ENSMUST00000164248 1269 ntBASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.79□□□□□ -0.04
Vps28Q9D1C8 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Gm10576-201ENSMUST00000191927 825 ntBASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps28Q9D1C8 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps28Q9D1C8 Gm6539-201ENSMUST00000119157 1064 ntBASIC14.77□□□□□ -0.05
Vps28Q9D1C8 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps28Q9D1C8 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms