Protein–RNA interactions for Protein: Q8VEJ9

Vps4a, Vacuolar protein sorting-associated protein 4A, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps4aQ8VEJ9 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps4aQ8VEJ9 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps4aQ8VEJ9 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps4aQ8VEJ9 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Vps4aQ8VEJ9 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.03□□□□□ -0.16
Vps4aQ8VEJ9 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps4aQ8VEJ9 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps4aQ8VEJ9 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Gm4899-201ENSMUST00000178708 719 ntBASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps4aQ8VEJ9 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Mir7023-201ENSMUST00000185093 64 ntBASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps4aQ8VEJ9 Ksr1-207ENSMUST00000226282 5260 ntBASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Vps4aQ8VEJ9 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms