Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ighv8-14-201ENSMUST00000196781 358 ntBASIC20.27■□□□□ 0.84
Usp47Q8BY87 AC153872.1-201ENSMUST00000199539 128 ntBASIC20.27■□□□□ 0.84
Usp47Q8BY87 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Gm12620-201ENSMUST00000119791 1986 ntBASIC20.27■□□□□ 0.84
Usp47Q8BY87 Gm12612-201ENSMUST00000140182 1986 ntBASIC20.27■□□□□ 0.84
Usp47Q8BY87 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Usp47Q8BY87 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Usp47Q8BY87 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp47Q8BY87 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp47Q8BY87 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Usp47Q8BY87 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC20.26■□□□□ 0.83
Usp47Q8BY87 AC154231.1-201ENSMUST00000220564 2175 ntBASIC20.26■□□□□ 0.83
Usp47Q8BY87 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Gm12134-201ENSMUST00000122109 520 ntBASIC20.26■□□□□ 0.83
Usp47Q8BY87 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp47Q8BY87 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Syt7-205ENSMUST00000224135 1557 ntBASIC20.25■□□□□ 0.83
Usp47Q8BY87 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Gm37714-201ENSMUST00000194742 342 ntBASIC20.25■□□□□ 0.83
Usp47Q8BY87 AC139350.3-201ENSMUST00000226151 420 ntBASIC20.25■□□□□ 0.83
Usp47Q8BY87 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp47Q8BY87 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Gm37736-201ENSMUST00000193564 2802 ntBASIC20.24■□□□□ 0.83
Usp47Q8BY87 Gm7488-201ENSMUST00000117148 684 ntBASIC20.24■□□□□ 0.83
Usp47Q8BY87 Gm15393-201ENSMUST00000120499 219 ntBASIC20.24■□□□□ 0.83
Usp47Q8BY87 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Gm6218-201ENSMUST00000219812 628 ntBASIC20.24■□□□□ 0.83
Usp47Q8BY87 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Usp47Q8BY87 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Gm12585-201ENSMUST00000117307 290 ntBASIC20.23■□□□□ 0.83
Usp47Q8BY87 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms