Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Scaf4Q6PFF0 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Scaf4Q6PFF0 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 AC158538.1-201ENSMUST00000225870 294 ntBASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.24□□□□□ -0.13
Scaf4Q6PFF0 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Gm6944-201ENSMUST00000182449 1006 ntBASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 AC164565.1-201ENSMUST00000217520 1484 ntBASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Scaf4Q6PFF0 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm7230-201ENSMUST00000173026 815 ntBASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm6550-201ENSMUST00000187574 993 ntBASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scaf4Q6PFF0 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scaf4Q6PFF0 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scaf4Q6PFF0 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms