Protein–RNA interactions for Protein: Q62205

Scn9a, Sodium channel protein type 9 subunit alpha, mousemouse

Predictions only

Length 1,984 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn9aQ62205 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 Gm10339-203ENSMUST00000225409 1671 ntBASIC16.69■□□□□ 0.26
Scn9aQ62205 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC16.69■□□□□ 0.26
Scn9aQ62205 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC16.69■□□□□ 0.26
Scn9aQ62205 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC16.69■□□□□ 0.26
Scn9aQ62205 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Scn9aQ62205 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC16.69■□□□□ 0.26
Scn9aQ62205 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn9aQ62205 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC16.68■□□□□ 0.26
Scn9aQ62205 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Gm27772-201ENSMUST00000184900 187 ntBASIC16.68■□□□□ 0.26
Scn9aQ62205 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC16.68■□□□□ 0.26
Scn9aQ62205 Gm43818-201ENSMUST00000200605 466 ntBASIC16.68■□□□□ 0.26
Scn9aQ62205 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC16.68■□□□□ 0.26
Scn9aQ62205 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.68■□□□□ 0.26
Scn9aQ62205 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Scn9aQ62205 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 AC115735.4-201ENSMUST00000227460 1944 ntBASIC16.68■□□□□ 0.26
Scn9aQ62205 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Scn9aQ62205 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Scn9aQ62205 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Scn9aQ62205 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn9aQ62205 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC16.68■□□□□ 0.26
Scn9aQ62205 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC16.67■□□□□ 0.26
Scn9aQ62205 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC16.67■□□□□ 0.26
Scn9aQ62205 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC16.67■□□□□ 0.26
Scn9aQ62205 Gm27501-201ENSMUST00000183599 107 ntBASIC16.67■□□□□ 0.26
Scn9aQ62205 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC16.67■□□□□ 0.26
Scn9aQ62205 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC16.67■□□□□ 0.26
Scn9aQ62205 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC16.67■□□□□ 0.26
Scn9aQ62205 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Gm43133-201ENSMUST00000197472 463 ntBASIC16.67■□□□□ 0.26
Scn9aQ62205 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC16.67■□□□□ 0.26
Scn9aQ62205 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.67■□□□□ 0.26
Scn9aQ62205 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn9aQ62205 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Ankra2-208ENSMUST00000226100 1476 ntBASIC16.66■□□□□ 0.26
Scn9aQ62205 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Scn9aQ62205 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC16.66■□□□□ 0.26
Scn9aQ62205 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Scn9aQ62205 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn9aQ62205 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Scn9aQ62205 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Gm37015-201ENSMUST00000192763 1521 ntBASIC16.66■□□□□ 0.26
Scn9aQ62205 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Scn9aQ62205 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC16.66■□□□□ 0.26
Scn9aQ62205 Gm37466-201ENSMUST00000195692 652 ntBASIC16.66■□□□□ 0.26
Scn9aQ62205 Gm45880-201ENSMUST00000213041 853 ntBASIC16.66■□□□□ 0.26
Scn9aQ62205 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn9aQ62205 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Scn9aQ62205 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms