Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm28018-201ENSMUST00000103869 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm26399-201ENSMUST00000103937 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm23547-201ENSMUST00000158210 271 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm25349-201ENSMUST00000177728 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm23616-201ENSMUST00000177797 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm25871-201ENSMUST00000177816 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24752-201ENSMUST00000178240 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24496-201ENSMUST00000178287 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm25649-201ENSMUST00000178476 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm25548-201ENSMUST00000178681 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm23147-201ENSMUST00000178841 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm26095-201ENSMUST00000179270 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm22171-201ENSMUST00000179283 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm23936-201ENSMUST00000179354 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm22619-201ENSMUST00000179516 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm25255-201ENSMUST00000179579 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24755-201ENSMUST00000179691 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm26506-201ENSMUST00000179692 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm25086-201ENSMUST00000179931 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm23243-201ENSMUST00000180047 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24659-201ENSMUST00000180212 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24169-201ENSMUST00000180244 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm23689-201ENSMUST00000180354 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm27359-201ENSMUST00000184153 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm27785-201ENSMUST00000184268 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm27466-201ENSMUST00000184396 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm27703-201ENSMUST00000184836 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 AC162938.1-201ENSMUST00000213140 2323 ntBASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm14701-201ENSMUST00000117156 348 ntBASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm24158-201ENSMUST00000175263 71 ntBASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm9824-201ENSMUST00000178707 561 ntBASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gm18049-201ENSMUST00000208909 581 ntBASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Upf3bQ3ULL6 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms