Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC21.84■■□□□ 1.09
Cux1P53564 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC21.84■■□□□ 1.09
Cux1P53564 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Mir1247-201ENSMUST00000116706 82 ntBASIC21.84■■□□□ 1.09
Cux1P53564 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC21.84■■□□□ 1.09
Cux1P53564 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC21.84■■□□□ 1.09
Cux1P53564 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC21.84■■□□□ 1.09
Cux1P53564 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC21.84■■□□□ 1.09
Cux1P53564 Gm9728-201ENSMUST00000200197 1055 ntBASIC21.84■■□□□ 1.09
Cux1P53564 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC21.84■■□□□ 1.09
Cux1P53564 Gm18473-201ENSMUST00000220543 868 ntBASIC21.84■■□□□ 1.09
Cux1P53564 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Cux1P53564 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cux1P53564 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
Cux1P53564 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC21.83■■□□□ 1.09
Cux1P53564 Gm8399-201ENSMUST00000082300 1117 ntBASIC21.83■■□□□ 1.09
Cux1P53564 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cux1P53564 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
Cux1P53564 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Cux1P53564 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
Cux1P53564 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Cux1P53564 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC21.82■■□□□ 1.08
Cux1P53564 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
Cux1P53564 Ankra2-208ENSMUST00000226100 1476 ntBASIC21.82■■□□□ 1.08
Cux1P53564 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC21.82■■□□□ 1.08
Cux1P53564 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC21.82■■□□□ 1.08
Cux1P53564 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
Cux1P53564 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cux1P53564 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC21.81■■□□□ 1.08
Cux1P53564 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC21.81■■□□□ 1.08
Cux1P53564 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Gm9299-201ENSMUST00000206392 1140 ntBASIC21.81■■□□□ 1.08
Cux1P53564 AC166997.1-201ENSMUST00000225122 572 ntBASIC21.81■■□□□ 1.08
Cux1P53564 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC21.81■■□□□ 1.08
Cux1P53564 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC21.81■■□□□ 1.08
Cux1P53564 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC21.81■■□□□ 1.08
Cux1P53564 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC21.81■■□□□ 1.08
Cux1P53564 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC21.81■■□□□ 1.08
Cux1P53564 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Cux1P53564 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cux1P53564 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Cux1P53564 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
Cux1P53564 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC21.8■■□□□ 1.08
Cux1P53564 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Gm44397-201ENSMUST00000195950 113 ntBASIC21.8■■□□□ 1.08
Cux1P53564 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Cux1P53564 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Cux1P53564 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Gm6159-201ENSMUST00000191249 1724 ntBASIC21.8■■□□□ 1.08
Cux1P53564 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC21.8■■□□□ 1.08
Cux1P53564 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cux1P53564 Gm29608-201ENSMUST00000190444 463 ntBASIC21.8■■□□□ 1.08
Cux1P53564 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC21.8■■□□□ 1.08
Cux1P53564 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms