Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rn7sk-201ENSMUST00000083103 331 ntBASIC18.75■□□□□ 0.59
Col18a1P39061 Gm26315-201ENSMUST00000083890 321 ntBASIC18.75■□□□□ 0.59
Col18a1P39061 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Col18a1P39061 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.74■□□□□ 0.59
Col18a1P39061 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 AC121801.1-201ENSMUST00000225363 1899 ntBASIC18.74■□□□□ 0.59
Col18a1P39061 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Col18a1P39061 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Gm14350-201ENSMUST00000116642 640 ntBASIC18.74■□□□□ 0.59
Col18a1P39061 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC18.74■□□□□ 0.59
Col18a1P39061 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Col18a1P39061 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC18.74■□□□□ 0.59
Col18a1P39061 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Col18a1P39061 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Col18a1P39061 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col18a1P39061 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Gm24830-201ENSMUST00000102024 166 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC18.73■□□□□ 0.59
Col18a1P39061 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC18.73■□□□□ 0.59
Col18a1P39061 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Gm24514-201ENSMUST00000174961 285 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gm25890-201ENSMUST00000177643 165 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Rnu1b2-201ENSMUST00000178073 165 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Rnu1b1-201ENSMUST00000178250 165 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gm22614-201ENSMUST00000178300 165 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Col18a1P39061 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC18.73■□□□□ 0.59
Col18a1P39061 Abhd11os-203ENSMUST00000222613 363 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gm22042-201ENSMUST00000082989 165 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gm26232-201ENSMUST00000083360 166 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gm24136-201ENSMUST00000083374 165 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Rnu1b6-201ENSMUST00000083839 166 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gm26110-201ENSMUST00000083971 165 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.73■□□□□ 0.59
Col18a1P39061 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Col18a1P39061 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC18.73■□□□□ 0.59
Col18a1P39061 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col18a1P39061 Gm14451-201ENSMUST00000121581 1542 ntBASIC18.73■□□□□ 0.59
Col18a1P39061 Gm43579-201ENSMUST00000202387 1307 ntBASIC18.72■□□□□ 0.59
Col18a1P39061 Gm9333-201ENSMUST00000205452 1323 ntBASIC18.72■□□□□ 0.59
Col18a1P39061 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Col18a1P39061 Gm14263-201ENSMUST00000117955 746 ntBASIC18.72■□□□□ 0.59
Col18a1P39061 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC18.72■□□□□ 0.59
Col18a1P39061 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC18.72■□□□□ 0.59
Col18a1P39061 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC18.72■□□□□ 0.59
Col18a1P39061 Gm25732-201ENSMUST00000175168 60 ntBASIC18.72■□□□□ 0.59
Col18a1P39061 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col18a1P39061 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC18.72■□□□□ 0.59
Col18a1P39061 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC18.72■□□□□ 0.59
Col18a1P39061 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col18a1P39061 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col18a1P39061 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Col18a1P39061 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Col18a1P39061 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms