Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.71□□□□□ -0.21
Lire1P11260 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.71□□□□□ -0.21
Lire1P11260 AC117588.1-201ENSMUST00000228510 999 ntBASIC13.71□□□□□ -0.21
Lire1P11260 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lire1P11260 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lire1P11260 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.71□□□□□ -0.21
Lire1P11260 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lire1P11260 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lire1P11260 Gm43570-201ENSMUST00000199951 3688 ntBASIC13.71□□□□□ -0.22
Lire1P11260 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lire1P11260 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC13.71□□□□□ -0.22
Lire1P11260 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lire1P11260 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Lire1P11260 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC13.7□□□□□ -0.22
Lire1P11260 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC13.7□□□□□ -0.22
Lire1P11260 Gm15358-201ENSMUST00000119249 520 ntBASIC13.7□□□□□ -0.22
Lire1P11260 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC13.7□□□□□ -0.22
Lire1P11260 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC13.7□□□□□ -0.22
Lire1P11260 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC13.7□□□□□ -0.22
Lire1P11260 Gm7787-201ENSMUST00000216858 688 ntBASIC13.7□□□□□ -0.22
Lire1P11260 Gm8396-201ENSMUST00000057361 823 ntBASIC13.7□□□□□ -0.22
Lire1P11260 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC13.7□□□□□ -0.22
Lire1P11260 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Lire1P11260 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC13.7□□□□□ -0.22
Lire1P11260 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC13.7□□□□□ -0.22
Lire1P11260 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lire1P11260 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Lire1P11260 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC13.69□□□□□ -0.22
Lire1P11260 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Gm5357-201ENSMUST00000212720 1924 ntBASIC13.69□□□□□ -0.22
Lire1P11260 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
Lire1P11260 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.69□□□□□ -0.22
Lire1P11260 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.69□□□□□ -0.22
Lire1P11260 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Lire1P11260 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Lire1P11260 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Lire1P11260 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lire1P11260 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Lire1P11260 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Lire1P11260 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Lire1P11260 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Lire1P11260 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.68□□□□□ -0.22
Lire1P11260 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.68□□□□□ -0.22
Lire1P11260 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Lire1P11260 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Lire1P11260 Gm7229-201ENSMUST00000214719 1007 ntBASIC13.68□□□□□ -0.22
Lire1P11260 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.68□□□□□ -0.22
Lire1P11260 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Gm43205-201ENSMUST00000198622 1968 ntBASIC13.68□□□□□ -0.22
Lire1P11260 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.68□□□□□ -0.22
Lire1P11260 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.68□□□□□ -0.22
Lire1P11260 Gm42706-201ENSMUST00000199733 1910 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms