Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.14□□□□□ -0.15
Cbx4O55187 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cbx4O55187 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Cbx4O55187 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Nrn1-204ENSMUST00000224323 1779 ntBASIC14.14□□□□□ -0.15
Cbx4O55187 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Cbx4O55187 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Cbx4O55187 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC14.13□□□□□ -0.15
Cbx4O55187 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC14.13□□□□□ -0.15
Cbx4O55187 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC14.13□□□□□ -0.15
Cbx4O55187 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Cbx4O55187 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Cbx4O55187 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC14.13□□□□□ -0.15
Cbx4O55187 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.13□□□□□ -0.15
Cbx4O55187 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cbx4O55187 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Cbx4O55187 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Cbx4O55187 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.12□□□□□ -0.15
Cbx4O55187 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC14.12□□□□□ -0.15
Cbx4O55187 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Gm24513-201ENSMUST00000174964 138 ntBASIC14.12□□□□□ -0.15
Cbx4O55187 Gm27397-201ENSMUST00000184997 107 ntBASIC14.12□□□□□ -0.15
Cbx4O55187 Gm43575-201ENSMUST00000196420 516 ntBASIC14.12□□□□□ -0.15
Cbx4O55187 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC14.12□□□□□ -0.15
Cbx4O55187 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Gm15500-202ENSMUST00000071641 1019 ntBASIC14.12□□□□□ -0.15
Cbx4O55187 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Cbx4O55187 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
Cbx4O55187 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Cbx4O55187 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cbx4O55187 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Cbx4O55187 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
Cbx4O55187 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC14.11□□□□□ -0.15
Cbx4O55187 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.11□□□□□ -0.15
Cbx4O55187 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Cbx4O55187 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC14.11□□□□□ -0.15
Cbx4O55187 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Gm18737-201ENSMUST00000173594 937 ntBASIC14.11□□□□□ -0.15
Cbx4O55187 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC14.11□□□□□ -0.15
Cbx4O55187 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC14.11□□□□□ -0.15
Cbx4O55187 Gm18057-201ENSMUST00000208220 503 ntBASIC14.11□□□□□ -0.15
Cbx4O55187 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms