Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC11.96□□□□□ -0.49
Hmgb3O54879 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.5
Hmgb3O54879 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC11.96□□□□□ -0.5
Hmgb3O54879 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Hmgb3O54879 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hmgb3O54879 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
Hmgb3O54879 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC11.95□□□□□ -0.5
Hmgb3O54879 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC11.95□□□□□ -0.5
Hmgb3O54879 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Hmgb3O54879 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Hmgb3O54879 Gm15039-201ENSMUST00000118914 875 ntBASIC11.95□□□□□ -0.5
Hmgb3O54879 Gm8344-201ENSMUST00000119813 856 ntBASIC11.95□□□□□ -0.5
Hmgb3O54879 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Hmgb3O54879 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
Hmgb3O54879 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hmgb3O54879 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Gm15794-201ENSMUST00000120182 631 ntBASIC11.94□□□□□ -0.5
Hmgb3O54879 Gm11950-201ENSMUST00000121615 838 ntBASIC11.94□□□□□ -0.5
Hmgb3O54879 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Gm25745-201ENSMUST00000174945 133 ntBASIC11.94□□□□□ -0.5
Hmgb3O54879 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC11.94□□□□□ -0.5
Hmgb3O54879 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC11.94□□□□□ -0.5
Hmgb3O54879 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Hmgb3O54879 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hmgb3O54879 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.93□□□□□ -0.5
Hmgb3O54879 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC11.93□□□□□ -0.5
Hmgb3O54879 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 83.2 ms