Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim3Q9R1R2 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Gm6226-201ENSMUST00000117765 1146 ntBASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Gm45612-201ENSMUST00000211320 160 ntBASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim3Q9R1R2 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm9385-201ENSMUST00000117563 472 ntBASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm10154-201ENSMUST00000084445 354 ntBASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim3Q9R1R2 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms