Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gm27437-201ENSMUST00000183429 107 ntBASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Ighv1-25-201ENSMUST00000195638 345 ntBASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gm5626-201ENSMUST00000222151 1058 ntBASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ube3bQ9ES34 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm44981-201ENSMUST00000205549 1943 ntBASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Mir6977-201ENSMUST00000184960 64 ntBASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm33320-201ENSMUST00000192232 530 ntBASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm44608-201ENSMUST00000206827 855 ntBASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ube3bQ9ES34 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.12■□□□□ 0.33
Ube3bQ9ES34 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Syt7-204ENSMUST00000223586 1344 ntBASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ube3bQ9ES34 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms