Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 AC154687.2-201ENSMUST00000223853 640 ntBASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Gm45504-201ENSMUST00000211407 2107 ntBASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ccdc88aQ5SNZ0 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Gm13226-201ENSMUST00000117838 404 ntBASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 CT030657.3-201ENSMUST00000222707 1200 ntBASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ccdc88aQ5SNZ0 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 AC238811.3-201ENSMUST00000225422 709 ntBASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ccdc88aQ5SNZ0 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 AC155286.1-201ENSMUST00000218632 448 ntBASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ccdc88aQ5SNZ0 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm10478-201ENSMUST00000084451 396 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Mir1982-201ENSMUST00000157368 74 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm27892-201ENSMUST00000185017 106 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 Gm18827-201ENSMUST00000188341 790 ntBASIC16.44■□□□□ 0.22
Ccdc88aQ5SNZ0 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms