Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 BC037039-201ENSMUST00000192003 2205 ntBASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Gm15957-201ENSMUST00000118893 974 ntBASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Gm15806-201ENSMUST00000120696 955 ntBASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 AC159006.1-201ENSMUST00000226396 258 ntBASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Upf3aQ3ULJ3 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Gm14452-201ENSMUST00000118680 1632 ntBASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3aQ3ULJ3 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Gm13829-201ENSMUST00000119600 138 ntBASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms