Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col28a1Q2UY11 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.05□□□□□ -0.16
Col28a1Q2UY11 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.05□□□□□ -0.16
Col28a1Q2UY11 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col28a1Q2UY11 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col28a1Q2UY11 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms