Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Sybu-209ENSMUST00000228639 4113 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm13034-201ENSMUST00000121342 3177 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm9522-201ENSMUST00000182394 926 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm9229-201ENSMUST00000222777 126 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm43598-201ENSMUST00000202482 2479 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Gm5357-201ENSMUST00000212720 1924 ntBASIC12.47□□□□□ -0.41
Nkx3-1P97436 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Nkx3-1P97436 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Gm14127-201ENSMUST00000117906 678 ntBASIC12.46□□□□□ -0.41
Nkx3-1P97436 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Gm7390-201ENSMUST00000212452 1216 ntBASIC12.46□□□□□ -0.41
Nkx3-1P97436 AC154239.3-201ENSMUST00000226933 674 ntBASIC12.46□□□□□ -0.41
Nkx3-1P97436 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Nkx3-1P97436 Gm43352-201ENSMUST00000196419 3065 ntBASIC12.46□□□□□ -0.41
Nkx3-1P97436 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Nkx3-1P97436 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 BC037039-201ENSMUST00000192003 2205 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gm23984-201ENSMUST00000157139 203 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gm42612-201ENSMUST00000197986 623 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gm6745-201ENSMUST00000199216 526 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gm43170-201ENSMUST00000199827 612 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC12.45□□□□□ -0.42
Nkx3-1P97436 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms