Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Hoxd3P09027 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Hoxd3P09027 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm13015-201ENSMUST00000118674 204 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm6539-201ENSMUST00000119157 1064 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm4691-201ENSMUST00000182339 1000 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm2451-201ENSMUST00000199447 999 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm10290-201ENSMUST00000200451 999 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Olfr1233-203ENSMUST00000215469 1205 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Olfr1233-204ENSMUST00000216561 1192 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 AC126408.1-201ENSMUST00000225184 523 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
Hoxd3P09027 AC159621.2-201ENSMUST00000223519 1326 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Tcf21-202ENSMUST00000218002 1788 ntBASIC11.28□□□□□ -0.6
Hoxd3P09027 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC11.28□□□□□ -0.6
Hoxd3P09027 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Hoxd3P09027 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hoxd3P09027 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Hoxd3P09027 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hoxd3P09027 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hoxd3P09027 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hoxd3P09027 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.6
Hoxd3P09027 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
Hoxd3P09027 Gm37305-201ENSMUST00000195714 4279 ntBASIC11.27□□□□□ -0.6
Hoxd3P09027 Gm10584-201ENSMUST00000207036 2628 ntBASIC11.27□□□□□ -0.6
Hoxd3P09027 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Hoxd3P09027 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC11.27□□□□□ -0.6
Hoxd3P09027 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Hoxd3P09027 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
Hoxd3P09027 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Hoxd3P09027 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm8749-201ENSMUST00000117737 331 ntBASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm14057-201ENSMUST00000120631 482 ntBASIC11.27□□□□□ -0.61
Hoxd3P09027 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Hoxd3P09027 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm27622-201ENSMUST00000183779 60 ntBASIC11.27□□□□□ -0.61
Hoxd3P09027 Mir7023-201ENSMUST00000185093 64 ntBASIC11.27□□□□□ -0.61
Hoxd3P09027 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm36943-201ENSMUST00000194422 282 ntBASIC11.27□□□□□ -0.61
Hoxd3P09027 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm44953-201ENSMUST00000208745 1286 ntBASIC11.27□□□□□ -0.61
Hoxd3P09027 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 AC124742.1-201ENSMUST00000219909 547 ntTSL 3 BASIC11.27□□□□□ -0.61
Hoxd3P09027 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Hoxd3P09027 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms