Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.16□□□□□ -0.14
Cbx4O55187 Gm14822-201ENSMUST00000122247 291 ntBASIC14.16□□□□□ -0.14
Cbx4O55187 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC14.16□□□□□ -0.14
Cbx4O55187 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC14.16□□□□□ -0.14
Cbx4O55187 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Gm37230-201ENSMUST00000194491 818 ntBASIC14.16□□□□□ -0.14
Cbx4O55187 Gm45612-201ENSMUST00000211320 160 ntBASIC14.16□□□□□ -0.14
Cbx4O55187 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC14.16□□□□□ -0.14
Cbx4O55187 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cbx4O55187 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cbx4O55187 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cbx4O55187 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Cbx4O55187 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC14.15□□□□□ -0.14
Cbx4O55187 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Gm4913-201ENSMUST00000117075 1290 ntBASIC14.15□□□□□ -0.14
Cbx4O55187 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.15□□□□□ -0.14
Cbx4O55187 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC14.15□□□□□ -0.14
Cbx4O55187 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.15□□□□□ -0.14
Cbx4O55187 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cbx4O55187 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC14.15□□□□□ -0.14
Cbx4O55187 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cbx4O55187 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Cbx4O55187 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
Cbx4O55187 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.14□□□□□ -0.15
Cbx4O55187 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Gm45546-201ENSMUST00000211053 2394 ntBASIC14.14□□□□□ -0.15
Cbx4O55187 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC14.14□□□□□ -0.15
Cbx4O55187 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Gm12017-201ENSMUST00000122453 1003 ntBASIC14.14□□□□□ -0.15
Cbx4O55187 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cbx4O55187 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms