Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 AC166491.1-201ENSMUST00000227053 2308 ntBASIC11.98□□□□□ -0.49
Hmgb3O54879 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm10013-201ENSMUST00000106074 672 ntBASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm13312-201ENSMUST00000119631 718 ntBASIC11.98□□□□□ -0.49
Hmgb3O54879 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gm18622-201ENSMUST00000219361 595 ntBASIC11.98□□□□□ -0.49
Hmgb3O54879 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 AC158538.2-201ENSMUST00000225455 906 ntBASIC11.98□□□□□ -0.49
Hmgb3O54879 AC112142.1-201ENSMUST00000228796 918 ntBASIC11.98□□□□□ -0.49
Hmgb3O54879 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Gm45293-201ENSMUST00000209754 1812 ntBASIC11.97□□□□□ -0.49
Hmgb3O54879 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Hmgb3O54879 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC11.97□□□□□ -0.49
Hmgb3O54879 Gm9013-201ENSMUST00000132939 882 ntBASIC11.97□□□□□ -0.49
Hmgb3O54879 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Hmgb3O54879 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC11.97□□□□□ -0.49
Hmgb3O54879 Gm18032-201ENSMUST00000222541 538 ntBASIC11.97□□□□□ -0.49
Hmgb3O54879 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Hmgb3O54879 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC11.97□□□□□ -0.49
Hmgb3O54879 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Hmgb3O54879 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hmgb3O54879 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Hmgb3O54879 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Hmgb3O54879 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Hmgb3O54879 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC11.96□□□□□ -0.49
Hmgb3O54879 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Gm44981-201ENSMUST00000205549 1943 ntBASIC11.96□□□□□ -0.49
Hmgb3O54879 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Hmgb3O54879 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC11.96□□□□□ -0.49
Hmgb3O54879 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Gm42928-201ENSMUST00000197338 3339 ntBASIC11.96□□□□□ -0.49
Hmgb3O54879 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Gm15565-201ENSMUST00000118890 427 ntBASIC11.96□□□□□ -0.49
Hmgb3O54879 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Gm8318-201ENSMUST00000182954 872 ntBASIC11.96□□□□□ -0.49
Hmgb3O54879 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC11.96□□□□□ -0.49
Hmgb3O54879 AC122024.2-201ENSMUST00000220086 871 ntBASIC11.96□□□□□ -0.49
Hmgb3O54879 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC11.96□□□□□ -0.49
Hmgb3O54879 CT009510.1-201ENSMUST00000227972 270 ntBASIC11.96□□□□□ -0.49
Hmgb3O54879 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hmgb3O54879 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Hmgb3O54879 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms