Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nr1i3O35627 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nr1i3O35627 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Nr1i3O35627 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Gm12892-201ENSMUST00000117367 1146 ntBASIC15.52■□□□□ 0.08
Nr1i3O35627 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Gm27920-201ENSMUST00000183953 96 ntBASIC15.52■□□□□ 0.08
Nr1i3O35627 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.52■□□□□ 0.08
Nr1i3O35627 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.52■□□□□ 0.08
Nr1i3O35627 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nr1i3O35627 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Nr1i3O35627 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nr1i3O35627 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.51■□□□□ 0.07
Nr1i3O35627 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Gm9727-201ENSMUST00000161387 555 ntBASIC15.51■□□□□ 0.07
Nr1i3O35627 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC15.51■□□□□ 0.07
Nr1i3O35627 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nr1i3O35627 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Nr1i3O35627 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.5■□□□□ 0.07
Nr1i3O35627 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Nr1i3O35627 Gm8584-201ENSMUST00000171982 758 ntBASIC15.5■□□□□ 0.07
Nr1i3O35627 Gm43332-201ENSMUST00000202511 1044 ntBASIC15.5■□□□□ 0.07
Nr1i3O35627 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Mzt1-203ENSMUST00000227948 952 ntBASIC15.5■□□□□ 0.07
Nr1i3O35627 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Nr1i3O35627 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nr1i3O35627 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Nr1i3O35627 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Nr1i3O35627 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
Nr1i3O35627 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Nr1i3O35627 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Nr1i3O35627 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Nr1i3O35627 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Nr1i3O35627 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Nr1i3O35627 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Nr1i3O35627 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms