Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.02□□□□□ -0.33
Pcdh1F7BJK1 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gm38197-201ENSMUST00000192320 2122 ntBASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gm4899-201ENSMUST00000178708 719 ntBASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Pcdh1F7BJK1 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 AC122901.1-201ENSMUST00000214203 1790 ntBASIC13□□□□□ -0.33
Pcdh1F7BJK1 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Mir8098-201ENSMUST00000184011 137 ntBASIC13□□□□□ -0.33
Pcdh1F7BJK1 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC13□□□□□ -0.33
Pcdh1F7BJK1 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Pcdh1F7BJK1 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms