Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Gm11478-201ENSMUST00000117851 599 ntBASIC17.3■□□□□ 0.36
Ube4aE9Q735 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ube4aE9Q735 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Ube4aE9Q735 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 AC238811.3-201ENSMUST00000225422 709 ntBASIC17.3■□□□□ 0.36
Ube4aE9Q735 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ube4aE9Q735 Efs-202ENSMUST00000227037 2540 ntBASIC17.29■□□□□ 0.36
Ube4aE9Q735 Camk2g-217ENSMUST00000226630 1937 ntBASIC17.29■□□□□ 0.36
Ube4aE9Q735 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Gm45059-201ENSMUST00000205558 1077 ntBASIC17.29■□□□□ 0.36
Ube4aE9Q735 Gm5425-201ENSMUST00000214125 459 ntBASIC17.29■□□□□ 0.36
Ube4aE9Q735 AC155729.1-201ENSMUST00000227758 544 ntBASIC17.29■□□□□ 0.36
Ube4aE9Q735 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Ube4aE9Q735 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube4aE9Q735 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Gm5279-201ENSMUST00000199575 745 ntBASIC17.27■□□□□ 0.36
Ube4aE9Q735 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube4aE9Q735 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ube4aE9Q735 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube4aE9Q735 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube4aE9Q735 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms