Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm10040-201ENSMUST00000080726 1662 ntBASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm45412-201ENSMUST00000210217 2275 ntBASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm43579-201ENSMUST00000202387 1307 ntBASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm15544-201ENSMUST00000118776 1531 ntBASIC19.35■□□□□ 0.69
Scn4aQ9ER60 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 AC163637.1-201ENSMUST00000215491 1894 ntBASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Gm3508-201ENSMUST00000186012 792 ntBASIC19.34■□□□□ 0.69
Scn4aQ9ER60 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Scn4aQ9ER60 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn4aQ9ER60 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn4aQ9ER60 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn4aQ9ER60 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Scn4aQ9ER60 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC19.33■□□□□ 0.69
Scn4aQ9ER60 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn4aQ9ER60 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Scn4aQ9ER60 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Scn4aQ9ER60 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scn4aQ9ER60 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scn4aQ9ER60 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC19.33■□□□□ 0.68
Scn4aQ9ER60 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Gm28450-201ENSMUST00000187349 638 ntBASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Gm9678-201ENSMUST00000198979 1149 ntBASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Gm45684-201ENSMUST00000210244 1571 ntBASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.32■□□□□ 0.68
Scn4aQ9ER60 Gm8862-201ENSMUST00000198379 1346 ntBASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Gm43058-201ENSMUST00000197645 625 ntBASIC19.31■□□□□ 0.68
Scn4aQ9ER60 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn4aQ9ER60 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms