Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Ssr1-204ENSMUST00000225319 1610 ntBASIC11.78□□□□□ -0.52
RTRAFQ9CQE8 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
RTRAFQ9CQE8 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
RTRAFQ9CQE8 Gm42872-201ENSMUST00000200026 1967 ntBASIC11.78□□□□□ -0.52
RTRAFQ9CQE8 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC11.78□□□□□ -0.52
RTRAFQ9CQE8 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Gm45293-201ENSMUST00000209754 1812 ntBASIC11.77□□□□□ -0.52
RTRAFQ9CQE8 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Gm8344-201ENSMUST00000119813 856 ntBASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 AC158538.2-201ENSMUST00000225455 906 ntBASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 AC117588.1-201ENSMUST00000228510 999 ntBASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
RTRAFQ9CQE8 Gm30238-201ENSMUST00000195528 2603 ntBASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Gm6623-201ENSMUST00000173570 544 ntBASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Gm8349-201ENSMUST00000182720 1003 ntBASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
RTRAFQ9CQE8 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
RTRAFQ9CQE8 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 66.2 ms