Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim11Q99PQ2 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Gm5479-201ENSMUST00000160578 435 ntBASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Gm44492-201ENSMUST00000197012 141 ntBASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim11Q99PQ2 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Gm37230-201ENSMUST00000194491 818 ntBASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim11Q99PQ2 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Gm15483-201ENSMUST00000120338 456 ntBASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Gm12260-201ENSMUST00000122447 411 ntBASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Rpph1-201ENSMUST00000175096 319 ntBASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim11Q99PQ2 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms