Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Gm9182-201ENSMUST00000217829 639 ntBASIC13.9□□□□□ -0.18
Lsm1Q8VC85 AC138767.1-201ENSMUST00000222661 415 ntBASIC13.9□□□□□ -0.18
Lsm1Q8VC85 AC154222.1-201ENSMUST00000223882 475 ntBASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lsm1Q8VC85 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Lsm1Q8VC85 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Lsm1Q8VC85 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Lsm1Q8VC85 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Lsm1Q8VC85 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Lsm1Q8VC85 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Gm27301-201ENSMUST00000184012 127 ntBASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Gm37230-201ENSMUST00000194491 818 ntBASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lsm1Q8VC85 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Rubie-203ENSMUST00000227803 2430 ntBASIC13.88□□□□□ -0.19
Lsm1Q8VC85 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lsm1Q8VC85 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms