Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Gm44291-201ENSMUST00000203102 2865 ntBASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Nup88Q8CEC0 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Gm9385-201ENSMUST00000117563 472 ntBASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Gm43474-201ENSMUST00000196415 774 ntBASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 AC140397.2-201ENSMUST00000224213 834 ntBASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nup88Q8CEC0 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nup88Q8CEC0 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nup88Q8CEC0 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nup88Q8CEC0 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nup88Q8CEC0 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nup88Q8CEC0 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nup88Q8CEC0 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Gm13410-201ENSMUST00000117058 1415 ntBASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Nup88Q8CEC0 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Gm14057-201ENSMUST00000120631 482 ntBASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 AA543401-201ENSMUST00000164248 1269 ntBASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nup88Q8CEC0 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nup88Q8CEC0 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms