Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Vps53Q8CCB4 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Vps53Q8CCB4 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Vps53Q8CCB4 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Vps53Q8CCB4 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.85■□□□□ 0.29
Vps53Q8CCB4 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Gm24158-201ENSMUST00000175263 71 ntBASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Vps53Q8CCB4 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Gm45504-201ENSMUST00000211407 2107 ntBASIC16.84■□□□□ 0.29
Vps53Q8CCB4 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Vps53Q8CCB4 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Vps53Q8CCB4 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Vps53Q8CCB4 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
Vps53Q8CCB4 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Vps53Q8CCB4 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Gm27622-201ENSMUST00000183779 60 ntBASIC16.83■□□□□ 0.28
Vps53Q8CCB4 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Vps53Q8CCB4 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms