Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Gm27989-201ENSMUST00000184721 107 ntBASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Gm29541-201ENSMUST00000191351 678 ntBASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Gm5186-201ENSMUST00000218781 920 ntBASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb4Q6P8W9 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Hmgb4Q6P8W9 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Celf4-206ENSMUST00000224553 1729 ntBASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm43767-201ENSMUST00000198933 381 ntBASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb4Q6P8W9 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 82.7 ms