Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Gm7063-201ENSMUST00000186840 981 ntBASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm4913-201ENSMUST00000117075 1290 ntBASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm8749-201ENSMUST00000117737 331 ntBASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm27300-201ENSMUST00000184085 97 ntBASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm27335-201ENSMUST00000184758 97 ntBASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.04□□□□□ -0.16
Usp39Q3TIX9 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Gm17271-201ENSMUST00000165535 355 ntBASIC14.03□□□□□ -0.16
Usp39Q3TIX9 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 93.4 ms