Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Col8a1Q00780 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC12.33□□□□□ -0.44
Col8a1Q00780 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.44
Col8a1Q00780 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC12.33□□□□□ -0.44
Col8a1Q00780 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.33□□□□□ -0.44
Col8a1Q00780 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Col8a1Q00780 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.33□□□□□ -0.44
Col8a1Q00780 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC12.33□□□□□ -0.44
Col8a1Q00780 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.33□□□□□ -0.44
Col8a1Q00780 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC12.33□□□□□ -0.44
Col8a1Q00780 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.33□□□□□ -0.44
Col8a1Q00780 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.33□□□□□ -0.44
Col8a1Q00780 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Col8a1Q00780 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Col8a1Q00780 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col8a1Q00780 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Gm27631-201ENSMUST00000184163 466 ntBASIC12.32□□□□□ -0.44
Col8a1Q00780 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC12.32□□□□□ -0.44
Col8a1Q00780 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.32□□□□□ -0.44
Col8a1Q00780 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.32□□□□□ -0.44
Col8a1Q00780 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC12.32□□□□□ -0.44
Col8a1Q00780 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col8a1Q00780 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Col8a1Q00780 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Mir1247-201ENSMUST00000116706 82 ntBASIC12.31□□□□□ -0.44
Col8a1Q00780 Gm13392-201ENSMUST00000117708 150 ntBASIC12.31□□□□□ -0.44
Col8a1Q00780 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Gm5479-201ENSMUST00000160578 435 ntBASIC12.31□□□□□ -0.44
Col8a1Q00780 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.31□□□□□ -0.44
Col8a1Q00780 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col8a1Q00780 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col8a1Q00780 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms