Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Tpm1P58771 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Tpm1P58771 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC16.18■□□□□ 0.18
Tpm1P58771 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Tpm1P58771 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Tpm1P58771 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Tpm1P58771 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.17■□□□□ 0.18
Tpm1P58771 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
Tpm1P58771 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.17■□□□□ 0.18
Tpm1P58771 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Tpm1P58771 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Tpm1P58771 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Ntrk2-208ENSMUST00000225583 2719 ntBASIC16.16■□□□□ 0.18
Tpm1P58771 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.16■□□□□ 0.18
Tpm1P58771 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.16■□□□□ 0.18
Tpm1P58771 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.16■□□□□ 0.18
Tpm1P58771 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.16■□□□□ 0.18
Tpm1P58771 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Tpm1P58771 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.16■□□□□ 0.18
Tpm1P58771 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Tpm1P58771 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Tpm1P58771 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Tpm1P58771 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Tpm1P58771 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Tpm1P58771 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Gm4535-201ENSMUST00000182274 558 ntBASIC16.15■□□□□ 0.18
Tpm1P58771 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC16.15■□□□□ 0.18
Tpm1P58771 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.15■□□□□ 0.18
Tpm1P58771 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Gm9947-201ENSMUST00000067599 2920 ntBASIC16.15■□□□□ 0.18
Tpm1P58771 Gm10355-201ENSMUST00000097146 517 ntBASIC16.15■□□□□ 0.18
Tpm1P58771 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Tpm1P58771 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Tpm1P58771 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Tpm1P58771 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Tpm1P58771 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Gm14859-201ENSMUST00000117752 357 ntBASIC16.14■□□□□ 0.17
Tpm1P58771 Gm11780-201ENSMUST00000136880 516 ntBASIC16.14■□□□□ 0.17
Tpm1P58771 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.14■□□□□ 0.17
Tpm1P58771 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.14■□□□□ 0.17
Tpm1P58771 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms