Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
Lire1P11260 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.76□□□□□ -0.21
Lire1P11260 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Gm8344-201ENSMUST00000119813 856 ntBASIC13.76□□□□□ -0.21
Lire1P11260 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.76□□□□□ -0.21
Lire1P11260 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Auts2-212ENSMUST00000178555 309 ntBASIC13.76□□□□□ -0.21
Lire1P11260 Gm37153-201ENSMUST00000193637 231 ntBASIC13.76□□□□□ -0.21
Lire1P11260 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Lire1P11260 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Lire1P11260 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC13.76□□□□□ -0.21
Lire1P11260 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.76□□□□□ -0.21
Lire1P11260 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Lire1P11260 Gm45638-201ENSMUST00000211507 2878 ntBASIC13.76□□□□□ -0.21
Lire1P11260 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lire1P11260 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.75□□□□□ -0.21
Lire1P11260 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC13.75□□□□□ -0.21
Lire1P11260 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Lire1P11260 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Lire1P11260 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC13.75□□□□□ -0.21
Lire1P11260 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
Lire1P11260 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Chchd1-203ENSMUST00000224633 557 ntBASIC13.75□□□□□ -0.21
Lire1P11260 Bloc1s5-203ENSMUST00000224902 612 ntBASIC13.75□□□□□ -0.21
Lire1P11260 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
Lire1P11260 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lire1P11260 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Gm37297-201ENSMUST00000192974 2384 ntBASIC13.74□□□□□ -0.21
Lire1P11260 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Grk6-207ENSMUST00000225925 2769 ntBASIC13.74□□□□□ -0.21
Lire1P11260 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lire1P11260 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lire1P11260 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC13.74□□□□□ -0.21
Lire1P11260 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC13.74□□□□□ -0.21
Lire1P11260 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Gm5682-201ENSMUST00000173402 505 ntBASIC13.74□□□□□ -0.21
Lire1P11260 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC13.74□□□□□ -0.21
Lire1P11260 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Lire1P11260 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC13.74□□□□□ -0.21
Lire1P11260 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lire1P11260 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
Lire1P11260 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lire1P11260 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms