Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Col3a1P08121 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC17.09■□□□□ 0.33
Col3a1P08121 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC17.09■□□□□ 0.33
Col3a1P08121 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.09■□□□□ 0.33
Col3a1P08121 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Col3a1P08121 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Col3a1P08121 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC17.08■□□□□ 0.33
Col3a1P08121 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col3a1P08121 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col3a1P08121 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Col3a1P08121 Gm38037-201ENSMUST00000192600 1624 ntBASIC17.08■□□□□ 0.33
Col3a1P08121 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col3a1P08121 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col3a1P08121 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.33
Col3a1P08121 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
Col3a1P08121 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col3a1P08121 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col3a1P08121 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Col3a1P08121 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC17.08■□□□□ 0.32
Col3a1P08121 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Col3a1P08121 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC17.08■□□□□ 0.32
Col3a1P08121 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC17.08■□□□□ 0.32
Col3a1P08121 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC17.08■□□□□ 0.32
Col3a1P08121 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Col3a1P08121 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 AC121801.1-201ENSMUST00000225363 1899 ntBASIC17.08■□□□□ 0.32
Col3a1P08121 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.08■□□□□ 0.32
Col3a1P08121 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col3a1P08121 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC17.08■□□□□ 0.32
Col3a1P08121 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col3a1P08121 Gm18905-201ENSMUST00000205454 928 ntBASIC17.07■□□□□ 0.32
Col3a1P08121 Gm4971-201ENSMUST00000205991 1108 ntBASIC17.07■□□□□ 0.32
Col3a1P08121 Gm18062-201ENSMUST00000208020 547 ntBASIC17.07■□□□□ 0.32
Col3a1P08121 Gm18055-201ENSMUST00000208254 547 ntBASIC17.07■□□□□ 0.32
Col3a1P08121 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC17.07■□□□□ 0.32
Col3a1P08121 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC17.07■□□□□ 0.32
Col3a1P08121 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.07■□□□□ 0.32
Col3a1P08121 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC17.07■□□□□ 0.32
Col3a1P08121 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col3a1P08121 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col3a1P08121 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col3a1P08121 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Col3a1P08121 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col3a1P08121 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC17.06■□□□□ 0.32
Col3a1P08121 Gm11918-201ENSMUST00000121660 179 ntBASIC17.06■□□□□ 0.32
Col3a1P08121 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC17.06■□□□□ 0.32
Col3a1P08121 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 AC168058.1-201ENSMUST00000219521 2282 ntBASIC17.06■□□□□ 0.32
Col3a1P08121 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Col3a1P08121 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col3a1P08121 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col3a1P08121 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Col3a1P08121 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.05■□□□□ 0.32
Col3a1P08121 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms