Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.01□□□□□ -0.49
Hmgb3O54879 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC12□□□□□ -0.49
Hmgb3O54879 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Gm6345-202ENSMUST00000180900 204 ntBASIC12□□□□□ -0.49
Hmgb3O54879 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC12□□□□□ -0.49
Hmgb3O54879 Gm9172-201ENSMUST00000212092 954 ntBASIC12□□□□□ -0.49
Hmgb3O54879 AC153881.2-201ENSMUST00000214877 204 ntBASIC12□□□□□ -0.49
Hmgb3O54879 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 AC127349.1-201ENSMUST00000224590 266 ntBASIC12□□□□□ -0.49
Hmgb3O54879 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Gm21009-201ENSMUST00000197169 1669 ntBASIC12□□□□□ -0.49
Hmgb3O54879 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Hmgb3O54879 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb3O54879 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.49
Hmgb3O54879 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Gm37844-201ENSMUST00000192473 4097 ntBASIC11.99□□□□□ -0.49
Hmgb3O54879 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC11.99□□□□□ -0.49
Hmgb3O54879 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC11.99□□□□□ -0.49
Hmgb3O54879 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC11.99□□□□□ -0.49
Hmgb3O54879 AC153794.1-201ENSMUST00000169148 126 ntBASIC11.99□□□□□ -0.49
Hmgb3O54879 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb3O54879 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC11.99□□□□□ -0.49
Hmgb3O54879 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC11.99□□□□□ -0.49
Hmgb3O54879 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb3O54879 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb3O54879 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb3O54879 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb3O54879 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC11.98□□□□□ -0.49
Hmgb3O54879 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC11.98□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 107 ms