Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 AC158529.1-201ENSMUST00000223618 239 ntBASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ldb3Q9JKS4 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Gm42466-201ENSMUST00000202099 1301 ntBASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Gm44981-201ENSMUST00000205549 1943 ntBASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ldb3Q9JKS4 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Ldb3Q9JKS4 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Ldb3Q9JKS4 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.31
Ldb3Q9JKS4 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm22065-201ENSMUST00000103753 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm22066-201ENSMUST00000103761 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm24932-201ENSMUST00000103763 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm24115-201ENSMUST00000103799 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm22190-201ENSMUST00000103827 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm22191-201ENSMUST00000103831 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm24721-201ENSMUST00000103849 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm28018-201ENSMUST00000103869 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm26399-201ENSMUST00000103937 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm13015-201ENSMUST00000118674 204 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm25349-201ENSMUST00000177728 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm23616-201ENSMUST00000177797 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm25871-201ENSMUST00000177816 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm24752-201ENSMUST00000178240 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm24496-201ENSMUST00000178287 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm25649-201ENSMUST00000178476 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm25548-201ENSMUST00000178681 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm23147-201ENSMUST00000178841 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm26095-201ENSMUST00000179270 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm22171-201ENSMUST00000179283 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm23936-201ENSMUST00000179354 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm22619-201ENSMUST00000179516 110 ntBASIC13.14□□□□□ -0.31
Ldb3Q9JKS4 Gm25255-201ENSMUST00000179579 110 ntBASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms