Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trem1Q9JKE2 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.02□□□□□ -0.32
Trem1Q9JKE2 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trem1Q9JKE2 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Gm8520-201ENSMUST00000186517 868 ntBASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Gm18041-201ENSMUST00000218210 618 ntBASIC13.02□□□□□ -0.33
Trem1Q9JKE2 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Trem1Q9JKE2 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Mir1668-201ENSMUST00000184114 107 ntBASIC13.01□□□□□ -0.33
Trem1Q9JKE2 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 CT009713.7-201ENSMUST00000224689 571 ntBASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trem1Q9JKE2 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC13□□□□□ -0.33
Trem1Q9JKE2 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trem1Q9JKE2 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 AC121801.1-201ENSMUST00000225363 1899 ntBASIC13□□□□□ -0.33
Trem1Q9JKE2 Zkscan4-202ENSMUST00000225845 1506 ntBASIC13□□□□□ -0.33
Trem1Q9JKE2 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trem1Q9JKE2 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC13□□□□□ -0.33
Trem1Q9JKE2 Gm10052-201ENSMUST00000168019 960 ntBASIC13□□□□□ -0.33
Trem1Q9JKE2 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC13□□□□□ -0.33
Trem1Q9JKE2 AC122351.1-201ENSMUST00000220467 126 ntBASIC13□□□□□ -0.33
Trem1Q9JKE2 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Gm7729-201ENSMUST00000050143 801 ntBASIC13□□□□□ -0.33
Trem1Q9JKE2 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC13□□□□□ -0.33
Trem1Q9JKE2 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Trem1Q9JKE2 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Trem1Q9JKE2 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms