Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.21■□□□□ 0.35
Ube3bQ9ES34 AC102291.3-201ENSMUST00000226566 405 ntBASIC17.21■□□□□ 0.35
Ube3bQ9ES34 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ube3bQ9ES34 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ube3bQ9ES34 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ube3bQ9ES34 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Gm15957-201ENSMUST00000118893 974 ntBASIC17.2■□□□□ 0.34
Ube3bQ9ES34 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Gm23547-201ENSMUST00000158210 271 ntBASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Gm9229-201ENSMUST00000222777 126 ntBASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Ube3bQ9ES34 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Gm15487-201ENSMUST00000122373 465 ntBASIC17.19■□□□□ 0.34
Ube3bQ9ES34 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Gm6916-202ENSMUST00000205523 195 ntBASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Ube3bQ9ES34 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Gm4204-201ENSMUST00000110798 1231 ntBASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Gm3436-201ENSMUST00000179930 840 ntBASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms