Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Gm18246-201ENSMUST00000221023 728 ntBASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Gm11745-201ENSMUST00000121669 448 ntBASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Smc1aQ9CU62 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.23■□□□□ 0.19
Smc1aQ9CU62 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Rprl2-201ENSMUST00000157150 290 ntBASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms