Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm12485-201ENSMUST00000119641 291 ntBASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm8602-201ENSMUST00000184045 607 ntBASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm43094-201ENSMUST00000196549 921 ntBASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 AC155258.1-201ENSMUST00000219303 253 ntBASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm6983-201ENSMUST00000214912 628 ntBASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Nup98Q6PFD9 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Nup98Q6PFD9 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Nup98Q6PFD9 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Nup98Q6PFD9 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Nup98Q6PFD9 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Gm9002-201ENSMUST00000178437 499 ntBASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Gm29741-201ENSMUST00000192667 421 ntBASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Gm6266-201ENSMUST00000203844 806 ntBASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nup98Q6PFD9 Mir692-1-201ENSMUST00000102263 109 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm14730-201ENSMUST00000122378 1045 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm17150-201ENSMUST00000165577 381 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm28911-201ENSMUST00000188837 117 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 AY702102-202ENSMUST00000194651 1173 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm7498-201ENSMUST00000203282 1084 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm44719-201ENSMUST00000206404 149 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm6159-201ENSMUST00000191249 1724 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Mir7085-201ENSMUST00000184353 66 ntBASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Nup98Q6PFD9 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Nup98Q6PFD9 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.81■□□□□ 0.28
Nup98Q6PFD9 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Nup98Q6PFD9 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Nup98Q6PFD9 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms