Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.72□□□□□ -0.53
Col7a1Q63870 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.72□□□□□ -0.53
Col7a1Q63870 Gm19208-201ENSMUST00000213861 912 ntBASIC11.72□□□□□ -0.53
Col7a1Q63870 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC11.72□□□□□ -0.53
Col7a1Q63870 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.72□□□□□ -0.53
Col7a1Q63870 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Gm42471-201ENSMUST00000201457 1865 ntBASIC11.72□□□□□ -0.53
Col7a1Q63870 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Gm45118-201ENSMUST00000208928 825 ntBASIC11.72□□□□□ -0.53
Col7a1Q63870 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Itm2b-204ENSMUST00000228637 783 ntBASIC11.72□□□□□ -0.53
Col7a1Q63870 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col7a1Q63870 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col7a1Q63870 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Col7a1Q63870 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.71□□□□□ -0.53
Col7a1Q63870 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Gm27772-201ENSMUST00000184900 187 ntBASIC11.71□□□□□ -0.53
Col7a1Q63870 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Gm45606-201ENSMUST00000209836 2795 ntBASIC11.71□□□□□ -0.53
Col7a1Q63870 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col7a1Q63870 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.54
Col7a1Q63870 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Col7a1Q63870 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC11.71□□□□□ -0.54
Col7a1Q63870 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col7a1Q63870 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Col7a1Q63870 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC11.71□□□□□ -0.54
Col7a1Q63870 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col7a1Q63870 AA914427-201ENSMUST00000193194 1166 ntBASIC11.71□□□□□ -0.54
Col7a1Q63870 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC11.71□□□□□ -0.54
Col7a1Q63870 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col7a1Q63870 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Col7a1Q63870 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col7a1Q63870 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col7a1Q63870 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col7a1Q63870 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.7□□□□□ -0.54
Col7a1Q63870 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC11.7□□□□□ -0.54
Col7a1Q63870 AC099645.1-201ENSMUST00000226476 1105 ntBASIC11.7□□□□□ -0.54
Col7a1Q63870 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Col7a1Q63870 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC11.7□□□□□ -0.54
Col7a1Q63870 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm14208-201ENSMUST00000119645 678 ntBASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Col7a1Q63870 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm9726-201ENSMUST00000180321 678 ntBASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC11.7□□□□□ -0.54
Col7a1Q63870 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Arhgef33-207ENSMUST00000224966 490 ntBASIC11.7□□□□□ -0.54
Col7a1Q63870 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Col7a1Q63870 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Col7a1Q63870 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col7a1Q63870 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 58.3 ms