Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Trim40Q3UWA4 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Gm2420-202ENSMUST00000202224 2249 ntBASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim40Q3UWA4 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 AC124569.2-201ENSMUST00000225998 818 ntBASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim40Q3UWA4 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Gm7284-201ENSMUST00000131667 944 ntBASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 AC164567.1-201ENSMUST00000219185 960 ntBASIC13.61□□□□□ -0.23
Trim40Q3UWA4 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Gm6198-201ENSMUST00000191337 2929 ntBASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim40Q3UWA4 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.61□□□□□ -0.23
Trim40Q3UWA4 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms