Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Gm43352-201ENSMUST00000196419 3065 ntBASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.22■□□□□ 0.03
Upf3aQ3ULJ3 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 AC153872.1-201ENSMUST00000199539 128 ntBASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3aQ3ULJ3 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Gm9252-201ENSMUST00000172364 1602 ntBASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3aQ3ULJ3 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Gm11918-201ENSMUST00000121660 179 ntBASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 AC149294.4-201ENSMUST00000227870 882 ntBASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms