Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Hoxd3P09027 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Hoxd3P09027 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Hoxd3P09027 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Hoxd3P09027 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hoxd3P09027 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gm13517-201ENSMUST00000120782 1495 ntBASIC11.32□□□□□ -0.6
Hoxd3P09027 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Hoxd3P09027 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gm15063-201ENSMUST00000152648 895 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gm38114-201ENSMUST00000191877 1232 ntBASIC11.32□□□□□ -0.6
Hoxd3P09027 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Hoxd3P09027 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Gm29500-201ENSMUST00000185992 1344 ntTSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC11.32□□□□□ -0.6
Hoxd3P09027 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hoxd3P09027 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Gm21009-201ENSMUST00000197169 1669 ntBASIC11.31□□□□□ -0.6
Hoxd3P09027 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Gm8410-201ENSMUST00000117225 605 ntBASIC11.31□□□□□ -0.6
Hoxd3P09027 Trav13-3-201ENSMUST00000117226 336 ntBASIC11.31□□□□□ -0.6
Hoxd3P09027 Gm6415-201ENSMUST00000118488 348 ntBASIC11.31□□□□□ -0.6
Hoxd3P09027 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Gm5479-201ENSMUST00000160578 435 ntBASIC11.31□□□□□ -0.6
Hoxd3P09027 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC11.31□□□□□ -0.6
Hoxd3P09027 Gm43037-201ENSMUST00000196808 250 ntBASIC11.31□□□□□ -0.6
Hoxd3P09027 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hoxd3P09027 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms