Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
Col3a1P08121 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col3a1P08121 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Col3a1P08121 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Col3a1P08121 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC17.13■□□□□ 0.33
Col3a1P08121 Mir7654-201ENSMUST00000185082 70 ntBASIC17.13■□□□□ 0.33
Col3a1P08121 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col3a1P08121 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC17.13■□□□□ 0.33
Col3a1P08121 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.13■□□□□ 0.33
Col3a1P08121 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Col3a1P08121 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col3a1P08121 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Gm11478-201ENSMUST00000117851 599 ntBASIC17.12■□□□□ 0.33
Col3a1P08121 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC17.12■□□□□ 0.33
Col3a1P08121 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 AC159006.1-201ENSMUST00000226396 258 ntBASIC17.12■□□□□ 0.33
Col3a1P08121 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col3a1P08121 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col3a1P08121 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col3a1P08121 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.12■□□□□ 0.33
Col3a1P08121 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC17.12■□□□□ 0.33
Col3a1P08121 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Col3a1P08121 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC17.12■□□□□ 0.33
Col3a1P08121 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Col3a1P08121 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC17.12■□□□□ 0.33
Col3a1P08121 Gm27701-201ENSMUST00000184498 110 ntBASIC17.12■□□□□ 0.33
Col3a1P08121 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC17.12■□□□□ 0.33
Col3a1P08121 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC17.12■□□□□ 0.33
Col3a1P08121 AC154687.2-201ENSMUST00000223853 640 ntBASIC17.12■□□□□ 0.33
Col3a1P08121 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Col3a1P08121 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col3a1P08121 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC17.11■□□□□ 0.33
Col3a1P08121 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
Col3a1P08121 Gm44719-201ENSMUST00000206404 149 ntBASIC17.11■□□□□ 0.33
Col3a1P08121 Gm17795-201ENSMUST00000214505 757 ntBASIC17.11■□□□□ 0.33
Col3a1P08121 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col3a1P08121 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Col3a1P08121 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Col3a1P08121 AC159196.2-201ENSMUST00000224082 1622 ntBASIC17.1■□□□□ 0.33
Col3a1P08121 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col3a1P08121 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
Col3a1P08121 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Mir6392-201ENSMUST00000184924 108 ntBASIC17.1■□□□□ 0.33
Col3a1P08121 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC17.1■□□□□ 0.33
Col3a1P08121 CT030657.3-201ENSMUST00000222707 1200 ntBASIC17.1■□□□□ 0.33
Col3a1P08121 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC17.1■□□□□ 0.33
Col3a1P08121 AC155252.1-201ENSMUST00000226462 1208 ntBASIC17.1■□□□□ 0.33
Col3a1P08121 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.1■□□□□ 0.33
Col3a1P08121 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col3a1P08121 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.09■□□□□ 0.33
Col3a1P08121 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col3a1P08121 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms