Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Hmgb3O54879 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hmgb3O54879 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
Hmgb3O54879 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Hmgb3O54879 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hmgb3O54879 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Hmgb3O54879 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC12.01□□□□□ -0.49
Hmgb3O54879 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Hmgb3O54879 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC12.01□□□□□ -0.49
Hmgb3O54879 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC12.01□□□□□ -0.49
Hmgb3O54879 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Vti1a-206ENSMUST00000225529 1244 ntBASIC12.01□□□□□ -0.49
Hmgb3O54879 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Hmgb3O54879 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 CT030684.3-201ENSMUST00000227308 2445 ntBASIC12.01□□□□□ -0.49
Hmgb3O54879 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hmgb3O54879 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms