Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Gm13884-201ENSMUST00000118103 829 ntBASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Gm28659-201ENSMUST00000188013 759 ntBASIC14.38□□□□□ -0.11
Lima1Q9ERG0 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Acot6-202ENSMUST00000222921 3622 ntBASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Gm11764-201ENSMUST00000120221 623 ntBASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Gm10499-201ENSMUST00000174094 934 ntBASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Gm6550-201ENSMUST00000187574 993 ntBASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Gm29361-201ENSMUST00000183323 2000 ntBASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lima1Q9ERG0 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gm15173-201ENSMUST00000122049 433 ntBASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gm5253-201ENSMUST00000187104 1025 ntBASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gm9682-201ENSMUST00000197505 556 ntBASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gm10060-201ENSMUST00000212002 111 ntBASIC14.36□□□□□ -0.11
Lima1Q9ERG0 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lima1Q9ERG0 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 66.6 ms